Virtual Screening | Target Binding Site Prediction / Identification || Drug Discovery || P2c-3
6,173
Published 2020-04-06
#virtualscreening #drugdiscovery #bindingsite #bindingsiteprediction #bindingsiteidentification #activesite #sciartfun
Note: I have created a separate channel for entertainment content. All the entertainment videos will be gradually shifted from this channel to my new channel. All upcoming entertainment videos will be added to that channel. The link to that channel is / @roshanaliexploration
This channel will only contain educational videos. That's why I have renamed this channel as (SciArtFun Education).
How to predict and identify binding site residues of your target protein using online and offline free tools? This video will answer the question. This series of videos consists of three parts. This is part 2. Part 2 has been subdivided into three subparts a, b, c. This is subpart c. This is the fifth video of part 2. In this part you will see how to find the active/binding sites of your target.
for part 1 go to: • Virtual Screening | Logic Behind Virt...
for part 2a go to: • Virtual Screening | Ligands Library C...
for part 2b go to: • Virtual Screening | Ligands Library C...
For part 2c-1 go to: • Virtual Screening | Ligands Preproces...
for part 2c-2: • Virtual Screening | Target Preprocess...
For Next Video: • Virtual Screening | Target Based Virt...
For all the videos about Drug Designing go to: • Virtual Screening | Ligands Library C...
For discovery studio visualizer tutorials go to: • Download and Installation: Outdated M...
For bioinfomatics videos go to: • Learn MEGA in 7 Minutes | Phylogeneti...
For life sciences lessons go to: • Identify Plant Species Using Mobile C...
For other educational videos go to: • Nitrogenous bases structure identific...
For all the playlists: youtube.com/user/roshanali5/playlists?view=1&sort=…
For primer designing go to: • Primer Designing | Using PrimerBlast ...
For Biopython: • Biopython Course | Download and Insta...
A list is websites that provides links to several virtual screening tools.
1. bip.weizmann.ac.il/toolbox/structure/binding.htm
2. www.vls3d.com/index.php/links/bioinformatics/bindi…
3. www.playmolecule.org/
4. Click2drug.org
Links to some of the tools that can be used for binding site predictions.
1. prankweb.cz/
2. zhanglab.ccmb.med.umich.edu/COACH/
3. www.sbg.bio.ic.ac.uk/3dligandsite/
4. probis.cmm.ki.si/
5. www.playmolecule.org/CrypticScout/
6. www.pkumdl.cn:8000/cavityplus/index.php
All Comments (9)
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Thank you so much Roshan sir for sharing the knowledge. These videos helped me a lot. Thanks
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First video of this channel and subscribe done
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Thanks for your efforts 👍
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hello Roshan, i wanted to ask how can we search for protein structures(in Pdb format) of a certain protein? like i want to have structures of MSCRAMM proteins of Staphylococcus AUREUS but i don't know how to do it, later i have to search for its active sites too, could you please help me with this?
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Thanks so much for sharing this
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Can you please make us a video about ADME (absorption, distribution, metabolism and excretion) thank you
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Hello , i have docked a protein with a ligand through autodock 4 software but i font know how to visualize the docked protein ligand complex into chimera or elsewhere... The precise question ia how to visualise a single best pose of the docked result? Please help!!
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Hi, how if a protein cannot found in pdb database?? I'm currently working on TRIB2 gene but no pdb format available...
