NCBI Minute: Running the NCBI PGAP on Your Own Data

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Published 2019-12-12

Presented December 11, 2019.
You can now download (github.com/ncbi/pgap) NCBI's Prokaryotic Genome Annotation Pipeline (PGAP), originally developed at NCBI for RefSeq annotations, and run it on your own machine, a compute farm, or in the Cloud on your own data. PGAP predicts genes on bacterial and archaeal genomes using the same inputs and applications used inside NCBI, and you can now submit genome sequences annotated by your copy of PGAP to GenBank. In this webinar, you will learn how to download PGAP and see an example of how to run it on your own genome assembly to prepare for submission to GenBank. You will also learn how to keep your pipeline up-to-date and running smoothly.

All Comments (8)

@majeedsabbah2067 2 years ago

Thank you so much for this huge work
@user-kl2hz2oo8c 10 days ago

Can we install the stand-alone Prokaryotic Genome Annotation Pipeline (PGAP) in MacOS system?
@gildashounmanou4301 2 years ago

Why is my run failing? first I got a warning about GiB memory and then the run failed. How do I solve that?
@mdumar6479 2 years ago

Maam how to convert our contigue or assembly into meta data
@Plantshealth 3 years ago

Kindly provide the link for PPTs
@ewtriplett 3 years ago

What is Docker? And how do I get it?
@lheengineering9550 2 years ago

video