Bioinformatics Pipelines for Beginners

Published 2023-06-20
In this video, I discuss what bioinformatics pipelines are, the common steps involved in building them, and three different ways to build them. I then finish with a tutorial to help you build your own simple pipeline.


CODE AVAILABLE HERE:
github.com/OscarW99/Tutorials/tree/main/simple_bio…


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All Comments (14)
  • @yomaam12345
    Ive been incredibly intrigued by the field of bioinformatics. It resulted me in starting my bachelors in computer science. I plan on building a solid foundation in biology as well and hopefully getting accepted into a masters program to get a masters in bioinformatics. Thank you for making these videos for beginners like me!
  • @kodai6314
    I’m in my first year of MA Bioinformatics, and it was really helpful to grasp the overview of piping in Bioinformatics. Thanks a lot
  • Hi oscar! Great explanation! Please do make the continuity video of workflow management systems!
  • @TalysaV
    I’ve been enjoying your videos! I’m a postdoc who generates a lot of sequencing data and one of my goals for my postdoc is to become comfortable with bioinformatics. I am starting with Python and R for right now.. essentially starting from scratch. I’ll be coming back to your videos for more help!
  • Reallyy helpful stuff! It wouldn't attract many but would love to watch a video where you code a simple pipeline live so can see your thought process in motion Either way loving the content and you got yourself a subscriber here!
  • @mocabeentrill
    Your videos are so helpful. Thank you for all the effort you put into them and articulating the technical concepts in simple language 🙏.
  • @batocci6959
    Hi Oscar! your channel really inspired me to keep studying and to learn more and more about bioinformatics, i really appreciate the content and energy in the videos :), keep it up!
  • @hubstrangers3450
    Thank you...., feel sorry for some of the folks (20yr ago) who did most of these workflows in scientific setting( Biomolecular sciences, Molecular Modelling, Cheinformatic, etc) with limited software development background and computing resources........ some what similar to modern day quantum computing scenario
  • @daklina
    So, mid if I ask but, what happens after you see which gene expressions are high? or which genes have higher expression levels than others? Need to search them in a database & see if they are relevant, etc?
  • @jeetu1230
    Hey hro is there any new pipeline tools or snake is best
  • @JazzandFazz
    Dude, a fellow aspiring bioinformatician here. Something’s wrong with your mic . Even at high volume you re too soft , can’t make sense of what you’re saying . You might need to fix your sound.