Pymol for beginners | Basic Tutorial Molecular Visualization of Proteins | Bioinformatics

Waht a great video...sir please make video on docking and simulations .please it would be a great help.

Thank you so much for this video! I was wondering is it possible to run animations on PyMOL, or should I integrate it with Blender or another 3D modeling program? I’d love to demonstrate some protein interactions for a club that I run at my Highschool!

Found the best video after searching for days. Absolute basics! Loved it! Thank you.

Thanks for the video! I wonder if you can help 🙏🏽, I am trying create crystallographic model BBI proteing from Vigna unguiculata (accession 2r33 in PDB) in order to visualize structural modifications caused by the aminoacidic differences between the analysed Vigna unguiculata accessions we are analysing. there 5 possible forms but we had proplems with 2 because their mutations are in the propeptide zone. my colleague said that there are few Vigna unguiculata BBIs in the database and in most cases they include a BBI + molecular target (like trypsin and chymotrypsin)

Very concise and informative. Excellent work. Thank you so much!

Woww... Thank you so much sir.... This video is the best stepping stone for using pymol

Thanks for making this video! Very helpful overview!

Sir could u pls tell me how we can presented our ball and stick structure or how we can analyze that their are ionic or covalent or which type of bonds are present

Hi Sir, thank you for the introduction. The undo and redo is not working. Is there any other option to return to the previous structure? It is very difficult to close the whole program and reopen it every time I do a mistake

What to do if my target and Ligand are far apart when I open them in pymol? As in Ligand is not in active site of target, but separate

I have heard it is better to use APBS plug in rather than vacuum electrostatics can anyone tell me why?

Please tell me the name of your protein in the video. I want to recreate that

How to see Cryo and x ray crystallography structure in pymol

Thanks 👍

Thank you

If I have a protien drug complex for example "Human Transthyretin complex with diclofenac" how I am supposed to find protein part and drug part? Could you please help me out with it??

SIR is it mandatory to register ?

Thank You Sir. It was very informative.

Thanks

great