How to design pcr primers using NCBI primer blast

Published 2022-10-01
This is practical tutorial for pcr primer designing by NCBI primer blast.

All Comments (17)
  • @pradeepkumarn9331
    I hope this is more useful for the primer design. But if possible can u elaborate the information regarding the range and information about the GC content, self complimentary!!! It will be more helpful Thankyou very much
  • @ghanishta5986
    Very helpful and informative video sir .. thanku very much
  • @ammarahmehak9986
    Sir make detail videos on ARMS and RfLp pcr primer design with detailed explanation
  • Thanks a lot for your wonderful videos. I have a request for videos on metagenomics data analysis in details, machine learning, R and Python. Thanks.
  • @Universe12355
    Love your channel and the way you make difficult concepts easy. I had a question about primer property checking using Primer-BLAST. I have a primer that contains degeneracy/wobbles and I want to check its properties such as Tm, self-complementarity, self 3’ complementary using the primer- blast… However, when I use the primer Blast and search, it states that “ambiguity letters other than N are not allowed in the primer sequence” So that forced me to replace all the degenerate/wobble letters with N. Would that still make the property results correct? Am I still getting the right answers if they are replaced with N? Thank you so much, I would really appreciate some insight on this, as I can not find an answer anywhere.
  • My primers shows unintended similarity with other Genes. How to get rid off and get primer specific to gene???
  • How to validate the MSP Primers before ordering them and can we do the 5 gene methylation in a single tube? can anyone explain about how to carry out?
  • @farahnaz7869
    After selecting F primer, when i press Control to select R primer , the F selection is deselected. please guide