Protein - Protein Docking Beginner Tutorial
38,491
Published 2020-11-10
ClustPro: cluspro.bu.edu/login.php
PatchDock: bioinfo3d.cs.tau.ac.il/PatchDock/
Hex: hex.loria.fr/
Literature:
www.nature.com/articles/nprot.2016.169
www.ncbi.nlm.nih.gov/pmc/articles/PMC2896144/
www.ncbi.nlm.nih.gov/pmc/articles/PMC1160241/
All Comments (21)
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Extremely informative
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Thank you so much sir. I am a phd student and just started learning about docking. I am very much delighted learning this way from a fantastic teacher like you. Please let us when the advanced session is coming.
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Excelent video! Hope to see part two soon!
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Hey There can you please create a playlist for the videos... the newer ones... it will make it much easier for us to navigate and follow the lectures serially.. THANKS SO MUCH!!!!!!!!!!
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Sir, thank you for this informative video. Please make the 2nd part of it and also explain how to show the residual interactions in publication.
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Thank you so much for this helpful video Prof :)
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hi sir. a good video. can you have a video on the preparation of the molecules before you can dock them using cluspro or any other software? or we can just use the molecules we downloaded from protein data bank as it is?
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A great tutorial video. Thank you so much Please how much time it tooks to get results?
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Thanks for your help
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Thank u so much for this information.Can we predict putative interactiing partners? If no reference is available?
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Sir, could you please suggest a way by which i can so multiple protein protein docking at once as i want to dock different proteins with one protein.
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Parabéns!
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Hi. I wonder if there is any software can predict the binding affinity for existing protein (already know which side of the protein interact with the peptide) with a 20-30 amino acid peptide??!
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Sir...what if the two protein dont interact? How the result will be displayed,?
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Very informative
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Sir, please share the link for the advance one, I am unable to find it.
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Sir, I want to do multiple protein docking. Is it possible via this?
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Hello sir very informative video. Sir, I want to dock wild-type and mutant RBD of Omicron Spike protein with ACE 2 receptor by cluspro. How can I do that? Please kindly ASAP. Thank you! Sir, also I have a macromolecule ligand 2s albumin and a model ligand flocculating protein and want to dock it with the mutant RBD Omiron S-protein-ACE 2 complex. How can I do that?
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I need your second video which you are mentioning in the video
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how to find the binding energy in the docking?
